NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209992_10048750

Scaffold Ga0209992_10048750


Overview

Basic Information
Taxon OID3300024344 Open in IMG/M
Scaffold IDGa0209992_10048750 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2037
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameKolumbo volcano, Aegean Sea
CoordinatesLat. (o)36.5264Long. (o)25.4868Alt. (m)Depth (m)470
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016619Metagenome / Metatranscriptome246Y
F045428Metagenome / Metatranscriptome153Y
F087902Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0209992_100487501F087902N/AMTYSNHNVKDVTADGAVKAGHGVIVSVHVVKAGASGDKVVFHNGDANSDPAEFTVYGEGIQNIQDIMRRFEDGIYAEVTG
Ga0209992_100487502F016619N/AMAITIAQNADHKSLTGKTLSIQSELTSKLKSTIVDVTYGGSDNYATNGNTVDLSLGGRISTVIGAEILHCNKGLLLQYAPAAAGAAATGKIKAYGHTPTSSTATVVALEELDASDTAVNSMTIRIRVIGF
Ga0209992_100487504F045428N/AMTTKVLALLALLSVGAFSAVYAETATVEVPFDSHGQSCSFDELAVEYHCVWQGMIPEPTFESMQEIRDLISADRYQQEIDRLNEEALAAIAEEKAKLTPNELVILEIENKLARGIATATDSVYMNLLKELDTCQQGMDKQTAPFQEAREFEISEFNLWKVNNVKYDGELGEIVMAIEECRAQHALKKVVGEGYSNMPTGDDDVQFSLLVEYEGIQAVPFEDYTATSKAVDMSAICDSNAFPDTHKAQHGCEVLYDGLTMDQVKRQNEVMFGTDGKIHYQSALLGKYHDYLNNNFRYATVEHKAFEEALAQPIAQEMIEENAFVQNAMRNE
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