Scaffold Ga0209992_10042123

Overview

Basic Information

• Taxon OID: 3300024344
• Scaffold ID: Ga0209992_10042123
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2234
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5264
  • Long. (^o): 25.4868
  • Depth (m): 470

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005656	Metagenome	394	Y
F014969	Metagenome	258	N
F025411	Metagenome	202	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209992_100421233	F014969	AGGA	MISNYPFGKKNDRPNYYYTQDVYSDGQGITGRMKKRKNKNVKIRKIKKAT
Ga0209992_100421234	F005656	AGGA	MKLKDLLNIQQIVEKRAIPSDVLEFDSSHYSKSKDMTVDILDLHLTHAIRILNNYLTDDEYPRYTETDRQEIFNDLKSIRGKLDDISDVVNK
Ga0209992_100421235	F025411	GAG	MSITRVYRDRDNNIKVEKFSFEEVKKDLTKLLSHDNRISNRKDKNETKRFIKHSADS