NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209992_10037211

Scaffold Ga0209992_10037211


Overview

Basic Information
Taxon OID3300024344 Open in IMG/M
Scaffold IDGa0209992_10037211 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2422
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameKolumbo volcano, Aegean Sea
CoordinatesLat. (o)36.5264Long. (o)25.4868Alt. (m)Depth (m)470
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000720Metagenome / Metatranscriptome923Y
F003020Metagenome / Metatranscriptome513Y
F004988Metagenome / Metatranscriptome416Y
F030928Metagenome184Y
F074037Metagenome120N
F083388Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0209992_100372111F074037N/ALLAAIDFLGKPNTHVYYDLGGKGPADLVVVNSATGTVDLYDVKMKSYRMMKGKMRLINRVKNKSAKNLDVKVLYV
Ga0209992_100372113F003020AGGAGMPDTSSFKSVSVSVTTHNQLKTLAENRFEVPVSIQKVIDFMLEKELKKKNGKTR
Ga0209992_100372114F004988N/AMVKLVETICPRCNGNGYIVVQNDDIDCPMCEEEFMHMGGKVTTHNGYVMLPIEQTRKNVEGGRESIARWSGETLPEKGKDGS
Ga0209992_100372116F083388GGAGGMVGMLMQKRIANLEWVIKRCSPEFKEVWERKLEQLINRRVEMAHERMVENARRVH
Ga0209992_100372117F030928GGAGMKEWLKTLEEYTSFSILGFTIFICLIVIVVNCKYIIKLESTIDTMWHEIEQVKETNIDLYQFIEEHKNDFD
Ga0209992_100372118F000720GAGGMTLIKENNKVRKEIPNRMMSATFALPIDGRRVVGIVNYTATDSGLMPLAFWIKLKPTDSYLDRELRASGKLISRCLQHGESLKELVDTLSQDNVIGQMANYLHKNMEDIIMGRQPEKRQRELSTDPYAMKE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.