Scaffold Ga0209992_10034387

Overview

Basic Information

• Taxon OID: 3300024344
• Scaffold ID: Ga0209992_10034387
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2550
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5264
  • Long. (^o): 25.4868
  • Depth (m): 470

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012041	Metagenome	284	Y
F044798	Metagenome	154	N
F074856	Metagenome	119	Y
F100957	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209992_100343873	F044798	N/A	MTDKEKLTKILEICKINAKGWDPDQHDGPAEFKAICDLIEEKGWYKNE
Ga0209992_100343874	F012041	AGGA	MSKKYRVSLSVDEEHVKRFDLTFDAEDEQDAEAQAMMEVKQYLGDYITAYADEEE
Ga0209992_100343875	F074856	AGGA	MDKKTITGWALQVTWSDGKEETLLDIDDQTAGEVDTFLTELEQERNNANKK
Ga0209992_100343876	F100957	AGGA	MLTKNKIKQINKDGWYWAEGSVVMCNYGDPDTFTFCMCRNHAEAKAVASGLNVLDWNEMHEEHGDLVQPDTEFVREESL