Scaffold Ga0209992_10024245

Overview

Basic Information

• Taxon OID: 3300024344
• Scaffold ID: Ga0209992_10024245
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3199
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5264
  • Long. (^o): 25.4868
  • Depth (m): 470

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000993	Metagenome / Metatranscriptome	811	Y
F002146	Metagenome	590	Y
F004376	Metagenome / Metatranscriptome	441	Y
F020878	Metagenome	221	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209992_1002424510	F000993	N/A	MSKLHHTKYKENYKKYILGTIETGINDEPLKTDQEKIKYIFDRFYSEYGFMVERVGKQKAIAEWLSGLALHIEYYYNDIVNLAVKMGSIDPNPSDKLRSKVEQNYWLFMANIIMSFETFEIKEWLLKHNKYIGN
Ga0209992_100242457	F020878	GGA	MIIKLFGKQISINNKKWKQDLAIWSLYYRTEIVIAIASFILGAIIF
Ga0209992_100242458	F004376	AGGGGG	MKCLDCGCDEGTLFKEFQENPDESYSWHDLAMMTEVCVSCGSENIKIESEE
Ga0209992_100242459	F002146	AGG	MIKNILNFLLWKKEEIFSFLDYVLFLGMFYIIYLGLKHADQINQLIIELKGGAI