Scaffold Ga0209992_10015971

Overview

Basic Information

• Taxon OID: 3300024344
• Scaffold ID: Ga0209992_10015971
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4281
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (58.82%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5264
  • Long. (^o): 25.4868
  • Depth (m): 470

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002146	Metagenome	590	Y
F020461	Metagenome	224	Y
F020878	Metagenome	221	N
F042856	Metagenome	157	Y
F058908	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209992_1001597110	F020878	AGGGGG	MIIKLFGKQITINNKKWQQDLLAWSLYYRTEIVFFLVGFILGAIIF
Ga0209992_1001597114	F042856	N/A	MGIINKQIQQQNLRELARLTFLNLMSANGVMAKTIIRNYKERKNNVHRQIQSTNQR
Ga0209992_1001597115	F020461	AGGA	MYIDKYKVQIKGDKYHHKTDKRMKDQVLATYQSDDGMNIKKLMSVIEELAECHDAHHNINFDITLNQYSQN
Ga0209992_100159718	F002146	AGGA	MIKNILNFLDYVLFLVMIYFCYLGLKYAPQINQLIIELKGGVI
Ga0209992_100159719	F058908	AGGGGG	MIKEKAINFLYKDWLDYKKYYKEKQDFNMKETFIEYLEREIPEYIENKGE