Scaffold Ga0209992

Basic Information
Taxon OID	3300024344 Open in IMG/M
Scaffold ID	Ga0209992_10010864 Open in IMG/M
Source Dataset Name	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209992_10010864 Open in IMG/M

Source Dataset Name

Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5617
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (68.75%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

5617

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (68.75%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location Name	Kolumbo volcano, Aegean Sea
Coordinates	Lat. (^o)	36.5264	Long. (^o)	25.4868	Alt. (m)	Depth (m)	470
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Kolumbo volcano, Aegean Sea

Coordinates

Lat. (^o)

36.5264

Long. (^o)

25.4868

Alt. (m)

Depth (m)

470

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002318	Metagenome / Metatranscriptome	571	Y
F002495	Metagenome / Metatranscriptome	554	Y
F002586	Metagenome	546	N
F003365	Metagenome / Metatranscriptome	491	Y
F005019	Metagenome	415	Y
F006528	Metagenome / Metatranscriptome	371	Y
F030249	Metagenome	186	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209992_1001086410	F002586	GGA	MIKIKLEANEVELALNIASKRYIGNLKMGKTFSYGYTKGIKSQLTDGILGALGEVAYAKATNSFYNGSYSDDNQFYSDSDFQNNIEIRTQEKKSYNFLLIRPGEKKGNYFLIIKDNDKDFNFSVMGSFIYNDDLPPEKLSNFGYQDRPAAYKIELKELKPMEEDVREDKF
Ga0209992_1001086412	F003365	GAG	MKTIGKEWTRKEEGGTFTADHLSPSQLSKSMDIWFNDYIILTAKERKALASNLNMDIGAIVGQAVQDIIVHKLTFEEVMKGKK
Ga0209992_1001086415	F002495	GGAGG	MSDNGSGKQKDWVLFPYDANNEKAIKIDFSGNVNLDNGNKGTILGVKGASRDGNTKFVKVFAQVGVLFKGDDKFTGEMNYSEVGGHKGLIGWINESGNILSGYKNEPRPKQAKPQSKQIP
Ga0209992_100108644	F002318	AGG	MKAKDYKSITNILESQNKGKKFYDFMDMEDVEFRIKEEIVPLPKQYFNNIIKLIKGEK
Ga0209992_100108646	F030249	GGCGG	MTRNKYGLPLIFDYVKLTDDRRLKNLEKMKYNCPKGWKELWSKKLDQLKKNINERTRQTL
Ga0209992_100108647	F006528	N/A	MKEQDKHSTKLNIERLAIQTFKNIIEGSRSINGVTWNRIKNLKPKEQIQCLKQLSQ
Ga0209992_100108648	F005019	N/A	MNIYGDMRTCIKCKNKADVVEKGKDYCAECWFRYFSGETIEQYEKRTNELEQARKDKYEK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209992_10010864

Overview

Ecosystem & Geography

Associated Families

Sequences