NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209992_10009753

Scaffold Ga0209992_10009753


Overview

Basic Information
Taxon OID3300024344 Open in IMG/M
Scaffold IDGa0209992_10009753 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6049
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameKolumbo volcano, Aegean Sea
CoordinatesLat. (o)36.5264Long. (o)25.4868Alt. (m)Depth (m)470
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007944Metagenome / Metatranscriptome342Y
F010325Metagenome / Metatranscriptome305Y
F013774Metagenome / Metatranscriptome268Y
F034352Metagenome / Metatranscriptome175Y
F037421Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0209992_1000975313F007944N/AMKMEQWSGFDKYCVMLNGRGPRVEGARMGYQAYLDFKKVKEALHLISKSNDSYSYDSNIYKRPITSSRAVQILEKIEQCKWDDDIRVVAKQINAGMMISPVK
Ga0209992_100097532F010325GAGGMLRKDQVENQLEQLQLAVERLKSSLVVPTEPGDVGTPIQVVVNALQQIENQIDTLINLIQLEE
Ga0209992_100097534F013774N/AVNDKLLELKRKKLQQQILYLRTELEETEWIFQDCLKEFDVEFRKYFKNPTEKKKNDVTKSPEYDIPATDVNSVFKKIAKETHPDKLINQNISDEEYDAKVDMYKEAQRSVKNRDWSKVVEIAKELGIDISDIKNDDSEYLKESVKRLTEKIKQLKLTYAWKWSHTQNQDKEIVKGMILQSLGLQQIKEKENGNK
Ga0209992_100097535F037421AGGAGMSNKTEDRTYFRELIRRLKELRVSADNGEIIVPNDDEDILEFNKLELPITPDIFHKMTSEEKEALFIWLNKENMPQA
Ga0209992_100097539F034352GGAMKYKVIKDYPTASGILYKEEVVKEDGNSTLKGHIRVKDNMGRIWFVPKENLAKKK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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