Scaffold Ga0209992_10009351

Overview

Basic Information

• Taxon OID: 3300024344
• Scaffold ID: Ga0209992_10009351
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6237
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5264
  • Long. (^o): 25.4868
  • Depth (m): 470

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001689	Metagenome / Metatranscriptome	651	Y
F004549	Metagenome / Metatranscriptome	433	Y
F007401	Metagenome	352	Y
F023485	Metagenome	210	N
F048277	Metagenome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209992_100093511	F023485	AGGA	MYTQLPESPVRKVYKCRHCGDVSIKFYDPKQDRVYTAEEWEVIMTDGRQALDKALRLVREDPKFFS
Ga0209992_100093512	F007401	N/A	MSDQEILKQRDLLDAILASRTTDQYERIENMKVMDSIYFKQNLPENVVLFPLQRIKRYVHSTTRKPRKKSL
Ga0209992_100093516	F048277	GGAGG	MFHLWHILAIVGVFVIGFFFGRWSVKTKYEAKVEELENRKEGIEWAARHH
Ga0209992_100093517	F004549	AGGAG	MNIKKFKSVAVAIDTYKLLKKIAADDDRSAGMQITYLVKKEAKKRKLAA
Ga0209992_100093518	F001689	AGGAG	MKLKREYEMTFKEGFRLGVRLTRAKAYIENARDAKRLGDETMAKLFMEFAQEWNDLARNAGRRFTPSTAHDPEQSAFDFGDIEMQEHLSKLPHKLKETG