Scaffold Ga0209992_10007364

Overview

Basic Information

• Taxon OID: 3300024344
• Scaffold ID: Ga0209992_10007364
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7474
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (58.82%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5264
  • Long. (^o): 25.4868
  • Depth (m): 470

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030461	Metagenome / Metatranscriptome	185	N
F041434	Metagenome	160	Y
F062837	Metagenome	130	Y
F101309	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209992_1000736412	F062837	N/A	MDIHYGILQLFIGLCAILVGGLIVYFVIQYNIKKEKEEKQNEQRKVHDYEI
Ga0209992_1000736414	F041434	GGA	MTVKNKSVIKFTKDDIASISLDSHKYDTWASILLNTGVEIRSHSAELEQLILGKHKSYVAFGAITHTWLSMNNGEDFKV
Ga0209992_100073644	F101309	N/A	MASKIIKIKISKASTMQIQTFVLELGIIAKQWLRKVGVKIEVVK
Ga0209992_100073647	F030461	AGG	MKKALILLAFLTLVACSNKQVMLGKKCLKEVNGNETITTKSYVWLVNKDHDWSSDLTKGNCK