Scaffold Ga0209992_10006299

Overview

Basic Information

• Taxon OID: 3300024344
• Scaffold ID: Ga0209992_10006299
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8442
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (85.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae → Maricaulis → unclassified Maricaulis → Maricaulis sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5264
  • Long. (^o): 25.4868
  • Depth (m): 470

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020814	Metagenome / Metatranscriptome	222	Y
F031843	Metagenome	181	Y
F077945	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209992_1000629912	F020814	AGGA	MGRSKGNLKRGVPARIGNPPNKAIYPEWWEDGKNLMRLHPSYVERRKYEQKKQQKSR
Ga0209992_1000629916	F077945	AGCAGG	MVKNVEHGTMLGKCVVDGQPIFEGSGARSKNSTIVNGKWLSGDTILKIYPVAFQAFLDEHKDKEKEKEILLESLGEYGWQVNPETGKLQKL
Ga0209992_100062993	F031843	AGGA	MTMKQRKVKVPYTNYALPPSAEQGGKFVDFNEVLKEKKKVKIVRKKRNANIPTK