Scaffold Ga0209992_10005241

Overview

Basic Information

• Taxon OID: 3300024344
• Scaffold ID: Ga0209992_10005241
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9680
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (80.77%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae → Maricaulis → unclassified Maricaulis → Maricaulis sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5264
  • Long. (^o): 25.4868
  • Depth (m): 470

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010829	Metagenome / Metatranscriptome	298	Y
F020814	Metagenome / Metatranscriptome	222	Y
F045695	Metagenome / Metatranscriptome	152	Y
F059885	Metagenome / Metatranscriptome	133	Y
F061900	Metagenome / Metatranscriptome	131	N
F062149	Metagenome	131	Y
F084706	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209992_1000524111	F020814	GAG	MGRSKGNIGRRNPPRIGNPPNKEIYPEWWEKEENLMRLHPSYRRKDEQKKQKKSG
Ga0209992_1000524113	F045695	N/A	MKDKRQLFLNIWNKKNSPVRDRIKAKLEVRGIEPSELNCYEYWMGYIKPWADVRGNINHVNPFRNEAFMRSIGRNKYGTPFKMANRNKKKKRKFRK
Ga0209992_1000524115	F061900	GGAGG	MTDSSSDSDSYSQRDEMAAMAGELMEAKMQASQARNQMTHMLRMGNFHLEIVPNQDIDIEKFFDKTMNNIFERFGKDAFEVKVSGMENLKPSNGGGGMHG
Ga0209992_1000524116	F084706	GGAGG	MKTPEIGTTLGKCVFDNGIIVEGQNIRSQYATLRSGRWICGECLLDMLPTALEATESHMIAEAEKRDKLIAQVKEYGWSVNPETGKLEKL
Ga0209992_1000524119	F010829	GAG	MGNLADHNRLREEQGLYKEDPGAGTYTKDEMDYIPFLGKNPSDERPAVYTARFKVSDGIIELEAKRSGGKLYLTCLADEKHNRALFECVDRFVAAIFDGTAREIREAQPEDSEIMKLKKYIEQLEKDNEEHIETLEQLKSIMK
Ga0209992_1000524123	F062149	AGGAG	VTETQDKDLTAEAEQRDRWLKLLRAGYMYHQQEVKDTMNPIIGAAASDINLFHQALSVAIQDAIELIEQMEAMGFFDEELSTPGMAG
Ga0209992_100052419	F059885	GGA	MARMPISEFQERINIAQDMLREAYPDNPAVEQMCEAIDIAGQIVIHVSLPFQRIVEEKLDITQ