Scaffold Ga0209992

Basic Information
Taxon OID	3300024344 Open in IMG/M
Scaffold ID	Ga0209992_10004360 Open in IMG/M
Source Dataset Name	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209992_10004360 Open in IMG/M

Source Dataset Name

Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	11178
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (79.17%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

11178

Total Scaffold Genes

24 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (79.17%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location Name	Kolumbo volcano, Aegean Sea
Coordinates	Lat. (^o)	36.5264	Long. (^o)	25.4868	Alt. (m)	Depth (m)	470
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Kolumbo volcano, Aegean Sea

Coordinates

Lat. (^o)

36.5264

Long. (^o)

25.4868

Alt. (m)

Depth (m)

470

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007343	Metagenome	353	Y
F019151	Metagenome	231	Y
F024570	Metagenome	205	Y
F031530	Metagenome	182	Y
F033836	Metagenome	176	Y
F079193	Metagenome	116	Y
F095345	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209992_1000436013	F079193	N/A	LTNADDYGIMIVSNERKIDMKTEAVKTIFKSEDYGLEDHTLTVDKIVELDENGNVMVTKLIAYVIDPLDNAMVFNYSPYAKLSELLNSAKAWIQCGCPSDCDASGFPRKWDEASLHAWVA
Ga0209992_1000436014	F031530	GGAG	MDFVMLQSEDDGNGRLVELIHNLHCEVYEVVVDGIPVFNCTDLQQAQHEYNMECV
Ga0209992_1000436015	F033836	N/A	MSISEYELFGVSHHANETNTYSTVNKGISGMAEKNKETETTEERFISMVKETEVKAATLCMLALLAGLCCALMLGCSTSAKVEGGAEIIELKPLKMQELTYPVHDYSKICADCGFGEWTDSWCEAHIGSTAFCSASK
Ga0209992_1000436016	F024570	AGGA	MAYVAYEIKRSKETATGMRYLVKCNRLGKYAITSWVGSTGSAMGSVECQGKYDYVLKEWQKTFGKERYYPLIGSTE
Ga0209992_1000436017	F007343	AGGAG	MRVSDLQPAAYPQSPSVENPNCDSHRLFTNDFNKNSFIEANGDVEIVWNNQYKYWAVPAFAESRKAYGDAKQRFCDQHGSN
Ga0209992_1000436019	F019151	AGGA	MITADERAQEGLDLFEINGSQSFEMENETLKICASEDGTIHRSVRGLDVKDADGNTVFSLSWSESGVCGTLCNEDFKVEITEEF
Ga0209992_1000436022	F095345	AGGA	MSELRIIKERRFYDEHGTKKFALLVEGQTVKIESHPRSGSGPLLCRVVNPSEASKDFGVRDGMLVEVDWEDLGFEE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209992_10004360

Overview

Ecosystem & Geography

Associated Families

Sequences