NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209992_10004360

Scaffold Ga0209992_10004360


Overview

Basic Information
Taxon OID3300024344 Open in IMG/M
Scaffold IDGa0209992_10004360 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11178
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (79.17%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameKolumbo volcano, Aegean Sea
CoordinatesLat. (o)36.5264Long. (o)25.4868Alt. (m)Depth (m)470
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007343Metagenome353Y
F019151Metagenome231Y
F024570Metagenome205Y
F031530Metagenome182Y
F033836Metagenome176Y
F079193Metagenome116Y
F095345Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0209992_1000436013F079193N/ALTNADDYGIMIVSNERKIDMKTEAVKTIFKSEDYGLEDHTLTVDKIVELDENGNVMVTKLIAYVIDPLDNAMVFNYSPYAKLSELLNSAKAWIQCGCPSDCDASGFPRKWDEASLHAWVA
Ga0209992_1000436014F031530GGAGMDFVMLQSEDDGNGRLVELIHNLHCEVYEVVVDGIPVFNCTDLQQAQHEYNMECV
Ga0209992_1000436015F033836N/AMSISEYELFGVSHHANETNTYSTVNKGISGMAEKNKETETTEERFISMVKETEVKAATLCMLALLAGLCCALMLGCSTSAKVEGGAEIIELKPLKMQELTYPVHDYSKICADCGFGEWTDSWCEAHIGSTAFCSASK
Ga0209992_1000436016F024570AGGAMAYVAYEIKRSKETATGMRYLVKCNRLGKYAITSWVGSTGSAMGSVECQGKYDYVLKEWQKTFGKERYYPLIGSTE
Ga0209992_1000436017F007343AGGAGMRVSDLQPAAYPQSPSVENPNCDSHRLFTNDFNKNSFIEANGDVEIVWNNQYKYWAVPAFAESRKAYGDAKQRFCDQHGSN
Ga0209992_1000436019F019151AGGAMITADERAQEGLDLFEINGSQSFEMENETLKICASEDGTIHRSVRGLDVKDADGNTVFSLSWSESGVCGTLCNEDFKVEITEEF
Ga0209992_1000436022F095345AGGAMSELRIIKERRFYDEHGTKKFALLVEGQTVKIESHPRSGSGPLLCRVVNPSEASKDFGVRDGMLVEVDWEDLGFEE

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