NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209992_10003429

Scaffold Ga0209992_10003429


Overview

Basic Information
Taxon OID3300024344 Open in IMG/M
Scaffold IDGa0209992_10003429 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13309
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (68.18%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameKolumbo volcano, Aegean Sea
CoordinatesLat. (o)36.5264Long. (o)25.4868Alt. (m)Depth (m)470
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010829Metagenome / Metatranscriptome298Y
F041432Metagenome / Metatranscriptome160N
F051060Metagenome / Metatranscriptome144Y
F065101Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0209992_1000342910F065101AGGMNQVGTIKRIDQYERVYVPKQILEALGLEKSTEESHGGHCVWVETDMGYMLKKVNVDIEA
Ga0209992_100034293F010829GAGMGNLADHRRLRKEQGLHEDDPGTGEYTKDELNYIPFLGNNPSEEKPALYTGRFNVSKSIIELEAKRSGGKLYLTCMADEKVHRAIFECVDRFVTAIFDGSAREIKEAEPEDSQIMKLRAELSQVTKEKKEMKDTLETLRKALHG
Ga0209992_100034295F041432GGAGMAEQATELKLVGGLFRNKSKKGDVYYSGKGEDGTQYVLFRNAYWKEGEENKPYFRLHQKVPKGSSNTMMD
Ga0209992_100034296F051060N/AMDKLEHGTLLGKCALDGQPIYQGSGFRSIHSTVTNGKWISGDALLKLYQRCFEAFLAHNEDAEKEKQILLGKLEKYGWQTDPETGKLTKVLNRSE
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