Scaffold Ga0209992_10003216

Overview

Basic Information

• Taxon OID: 3300024344
• Scaffold ID: Ga0209992_10003216
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13985
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (72.41%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5264
  • Long. (^o): 25.4868
  • Depth (m): 470

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009923	Metagenome	311	Y
F057432	Metagenome	136	N
F060920	Metagenome	132	N
F100000	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209992_1000321610	F009923	GGAGG	MLKYIASIPVVLSILAATYGAFNYTSKLTAQIDKSTTTIALLQVEIENLEQRVYGDIDNIHAIFTDKTGRNSKNYAEAREELVKEMADMASWVGRIEGIVAALRDGSYKLASQAEMQALEEIVRTNTDSIRQFKYDMKDLENTISGGY
Ga0209992_1000321622	F057432	GGAGG	MAIKEVKSHPVNGPYNNTRYTSSAKAGKNGTYTWSTKAEDYDYNDGVHVWDIYNLPDGATPTIGETVKVSNKKSK
Ga0209992_1000321623	F060920	N/A	MGVNEARDFVQSKSQDFIKKLAAGALGYGVSKIPGATEGYKKIKEKVPKGFSASYDPSSGKISAGFKIKF
Ga0209992_100032169	F100000	GGAGG	MRWLFIILIFILIFSWASSAKARNDYLGTSYGSCERGRIELYTELRGTDGKDMYQDGDGDPNNSYTSYDDDVNGTVGIRFSWPLQSTCNNDTIDLMRENDRLRQELELLSVCGKYQELELGEQFATVREMCKGVSKKPSLEVTTEEEKPKVTLTVPLR