Scaffold Ga0209992_10001672

Overview

Basic Information

• Taxon OID: 3300024344
• Scaffold ID: Ga0209992_10001672
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22392
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (88.10%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5264
  • Long. (^o): 25.4868
  • Depth (m): 470

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002612	Metagenome / Metatranscriptome	543	Y
F037760	Metagenome	167	Y
F039678	Metagenome	163	Y
F054101	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209992_1000167214	F037760	AGG	MKSESRILFEYPEYQVEIEWNGSATFNVFNSGKNVNCFTDYSAKTMEQAQVIADEWLEEQVEDEKRYA
Ga0209992_1000167225	F054101	GAG	MSLCIHCEHECHHGDGGKCSSCNCLNCEHDIQEAVNKLEKVLKTEEKVVEFESDINLTEH
Ga0209992_1000167230	F002612	GAGG	MDEVRLAERIFKIIRTRQTQINEIITSNQVKDWNDYQNHLGQLETLNYIEQELSDLLKKQELDNESNFTETRR
Ga0209992_100016727	F039678	GGA	MTEELFWRRVSNLWTIYHSITDDLVYKAMWKRKLEELMQKGFEK