Scaffold Ga0209992

Basic Information
Taxon OID	3300024344 Open in IMG/M
Scaffold ID	Ga0209992_10001488 Open in IMG/M
Source Dataset Name	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209992_10001488 Open in IMG/M

Source Dataset Name

Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	24444
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (55.81%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

24444

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

24 (55.81%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location Name	Kolumbo volcano, Aegean Sea
Coordinates	Lat. (^o)	36.5264	Long. (^o)	25.4868	Alt. (m)	Depth (m)	470
Location on Map

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Source Dataset Sampling Location

Location Name

Kolumbo volcano, Aegean Sea

Coordinates

Lat. (^o)

36.5264

Long. (^o)

25.4868

Alt. (m)

Depth (m)

470

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F001235	Metagenome / Metatranscriptome	741	Y
F001625	Metagenome / Metatranscriptome	661	Y
F031648	Metagenome	182	Y
F064801	Metagenome / Metatranscriptome	128	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0209992_1000148822	F064801	N/A	MGFADRLKSAFRFTNKSYTETTTRPSIAQPYMSTDTGAKLPIFPFPLIMIYELADNIDALRIPIETLNREMFKNGFEVTEKYKYKCNNCAKEFQYEPLASDRPDDQPFETNDDAHVPHPRKKKAVEDKAVPDGVMCDTCGSTDLKRPVPENRKLLEDMLSKPINGNQQTLEDVARQLERDLEISDNAYCLCLKNYFIDDTTGKIDHDKTVIKEYLRIDPPQVAMIADSDGRLGFDDKRNKLYVCPRFEHRDKRLTEPVCDRCGAEALKAIMEVNSVYSIGIPQPKRVVYGEGEVIWKAGKYRPHLLYGYSPIYSVWSKAMSLSHMDEFIRKYFDKMRPPRGLLVVASRNYETFRKSWDTLTQRATEDPYMVHPLMVESDKGGQNMAQWLDFTGSLKELEFIEVRKELRMIIGAMYGVLPFYYGETPAGWSQEGLQVTITNRAVKWGQDILEQAFFRKIAGHLQVDDWKLQLKAGEETDKLRDLQTDGVEIQNMAMLQQMGFEITRTHTGEYKISKDSQITGEALAMMNSGMGGINGRGNMMGQQEENKQNFGQEPKNSRPSDVGGTGQGAPASGSGTTMSKKSEYPDGITPKNFVVVKKTLQTAVDFQWNKTKTVEELRKYGMTVRQARDLVQTEFQGMRRWEDE
Ga0209992_1000148824	F001235	N/A	MPTELNNNSNANDLTKKLWEKHQADEYTRVDNYKEAICINCFKRDATSATIADICGECAGKRGREPLLATVSHKMYGLCYFCGKYKFEIEQINARFCRSCHSRIAKVTKEYNKKGGMFGADPFWQKMRKKHGKDWKEIMSKGLGNKR
Ga0209992_1000148833	F001625	GAG	MALTITTSDWTNANVRKTLSWQAALTSKLRVYAIKVTFGSGDNYATGGVAADLKEGRISTLVAVIPTYSNCLQEVRYDKANEKIQLYNVGGGAESKFVEVTNTSSTCNSKVFEFLVIGY
Ga0209992_1000148834	F031648	N/A	MVEYNHNVVSFNSDTQIKGAHGVVVAVFCTKKGSSGAKCILKNGDSSGAAEFTIFGELEGNYQEINRRFEDGIYADITGSAEWTVVFK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209992_10001488

Overview

Ecosystem & Geography

Associated Families

Sequences