NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209992_10001020

Scaffold Ga0209992_10001020


Overview

Basic Information
Taxon OID3300024344 Open in IMG/M
Scaffold IDGa0209992_10001020 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32549
Total Scaffold Genes61 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)56 (91.80%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameKolumbo volcano, Aegean Sea
CoordinatesLat. (o)36.5264Long. (o)25.4868Alt. (m)Depth (m)470
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007343Metagenome353Y
F038272Metagenome166Y
F053336Metagenome141Y
F054095Metagenome140N
F076062Metagenome118Y
F103392Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0209992_100010203F103392AGGAMAKVLIELEFDASNGRKVLNCDVWDYLEELIEDESLDYTVYDGDETYGVLDYQEKT
Ga0209992_1000102032F053336GAGGMQEYFEYLTNLRDGGTMNMMWAPTMLQSRFDLSVKESREVFSKWCESLKGN
Ga0209992_1000102034F054095AGGAMKPKWKMNGKDMRFDGDIEIGICEVRDLFDDLVVTLWVEQEESGSITVTTLGGIGNGRYDVQVVAKHKQVEEGEEWKEL
Ga0209992_1000102035F007343AGGAGMRVSDLQPAAYPQSPSVELPNQDAHRLFTNEFNKNSFIEENGDVEIVWNERYKFWAVPAFAEGRRIYSEAKQRYCDQHGSN
Ga0209992_100010204F076062AGGAGMARLGLNSIYQRRLETRKGGSGKRITMSCGGGMAGSKWYEEVTDIDMEGEFIDVITIDGQSKLLGKQYVVKIMDVDFHAQVLDKDGEVTIEWYDVPKGGHVEHCNVERDRTQPHIMTPCYIKSLPNYHKNKKELING
Ga0209992_1000102043F038272AGGAMTRNEAKLELFKLNRNIEKMVVAHANELGQFNKNCLMNDLQRMWDRKKTLINTING
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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