Scaffold Ga0209992

Basic Information
Taxon OID	3300024344 Open in IMG/M
Scaffold ID	Ga0209992_10000656 Open in IMG/M
Source Dataset Name	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209992_10000656 Open in IMG/M

Source Dataset Name

Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	43739
Total Scaffold Genes	84 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	56 (66.67%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

43739

Total Scaffold Genes

84 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

56 (66.67%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location Name	Kolumbo volcano, Aegean Sea
Coordinates	Lat. (^o)	36.5264	Long. (^o)	25.4868	Alt. (m)	Depth (m)	470
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Kolumbo volcano, Aegean Sea

Coordinates

Lat. (^o)

36.5264

Long. (^o)

25.4868

Alt. (m)

Depth (m)

470

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005649	Metagenome / Metatranscriptome	394	Y
F021863	Metagenome / Metatranscriptome	217	Y
F032032	Metagenome	181	Y
F052869	Metagenome	142	Y
F064080	Metagenome	129	Y
F099849	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209992_1000065620	F064080	N/A	MNEFLHFLKHLIGLCGETSHPSLLISGGVFLTTIGLYWKKLIGYMKDLF
Ga0209992_1000065622	F021863	AGG	MAKKKNEPFHIKHNLKQFELKDGTKFWAKDEEDAKLYRKKVGEK
Ga0209992_1000065628	F099849	GGA	MTYVFEKEMKLAPLKVEYVMSSITNEIKVVDMWYDGKPSKISYMSDENRLNLMDELERDYLDKSKDLMSNEEAEWLEGKAEIAMGI
Ga0209992_1000065640	F032032	AGGAG	MKKRMISKETIKVGKKSYTEEKYWPMFPSDRIITTRMRKITMGDIFNVCEFVLISAAGFFLLKFMFDFGSAMEAWSELDKLMRGY
Ga0209992_1000065671	F005649	N/A	MLFGKIVQRSLSKTRYKRLINLIGELSLDGFVIDWHLANAEMVNDFVEPVSNYEPTYAYA
Ga0209992_100006568	F052869	GGAG	MNKVVKIIMSTLIGAGCFSAGLYYATLEFDETLDNIMGEYEVISEQVDAFVDVSNPETIRLYTKELRRILDDIKFLHVLIESGQIADEKLDDYLASQQSNVDVLEKTLSSITVEVDSMLTSSHDHMHLMVVELQDSVKTQLTSSATEVSTEVNKLSSQFKEIKNQLDELNKVIDKIKNSKLAKHLK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209992_10000656

Overview

Ecosystem & Geography

Associated Families

Sequences