Scaffold Ga0209992_10000427

Overview

Basic Information

• Taxon OID: 3300024344
• Scaffold ID: Ga0209992_10000427
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56659
• Total Scaffold Genes: 92
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 52 (56.52%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5264
  • Long. (^o): 25.4868
  • Depth (m): 470

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001066	Metagenome / Metatranscriptome	788	Y
F001625	Metagenome / Metatranscriptome	661	Y
F098028	Metagenome	104	Y
F101853	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209992_1000042769	F101853	N/A	MNVARSAARISGNFGVSFFSPLVGGNVAESIYDVGLSFEMSITIALISAAFVTGLAISKEASEWGKQNDKKRK
Ga0209992_100004277	F001066	N/A	MADDIFKIKKLDGTYIASEDKRKTLSKFNAAKHFKTANIPALCDQCVYRSIEAGGNGKCPKYEKGAACVIRDDFVQFINEIDTRNPEDLKSMMDMIAKLSFENVLMALTQSKLDGNIPDRNTKSEINTLLNVVKSINDLNSKIVVTEKAEYNKEGDIANIFRQIKAQKSGD
Ga0209992_1000042775	F001625	N/A	MAVTVSTADWTNANVRKTLSWQAALTSKLRVYKVKVTAGGSDAYATNGVSADLKEGRISTLVAVIPEFTDSLYKVEYDKTNEKIKLYSVGGSAGAVFAEVANSTSIANKVFEFLVIGY
Ga0209992_100004278	F098028	GAG	MFGWLKREKFVLPPEEVQEEFVREIEERLKTAKGSEKTKLTYMLANQLMFLNQIKNKKKPRKPIKMNNRGKWVWVENE