Scaffold Ga0209992_10000356

Overview

Basic Information

• Taxon OID: 3300024344
• Scaffold ID: Ga0209992_10000356
• Source Dataset Name: Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 62168
• Total Scaffold Genes: 93
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 67 (72.04%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Kolumbo volcano, Aegean Sea
• Coordinates
  • Lat. (^o): 36.5264
  • Long. (^o): 25.4868
  • Depth (m): 470

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043450	Metagenome	156	N
F080489	Metagenome	115	Y
F096027	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209992_1000035615	F080489	N/A	MYFIITAMLFFSGTDTIIYTQYDKATFDSVPACQEFLFQNKVQLTLDLLENHNKNGDMKGFEYFCESRYLVPTPEGPEV
Ga0209992_1000035627	F043450	AGG	MDGLWLGDKILRLIRDKKEQTTNFVMQGSTTERNDYNYMIGKFRVLEEIEDEIKEILDKGEKSE
Ga0209992_1000035659	F096027	N/A	MIDRTDEETLYKRIEKVEKLLRQDLSQGARRIWTGKLRDLQELRWQKANERIEALARFGGAFIEF