NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209992_10000287

Scaffold Ga0209992_10000287


Overview

Basic Information
Taxon OID3300024344 Open in IMG/M
Scaffold IDGa0209992_10000287 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)69348
Total Scaffold Genes86 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)62 (72.09%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameKolumbo volcano, Aegean Sea
CoordinatesLat. (o)36.5264Long. (o)25.4868Alt. (m)Depth (m)470
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006773Metagenome / Metatranscriptome365Y
F015360Metagenome / Metatranscriptome255Y
F019253Metagenome / Metatranscriptome231Y
F031450Metagenome / Metatranscriptome182Y
F076605Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0209992_1000028725F031450AGGMASVYKTNKKENIDKTLTMRKSGSGEKVFSHVGGKTHALEKKAISKKEALKQIRDVTEIEIRERHGHHIGKKQHSKNKYK
Ga0209992_1000028737F076605N/AMIVIWSSMNNQKYFVYRLAQQSEKTSYHFVGADFGSEATKEAVYYGITSDPQSRLSKHRPKKGQDISLIVMAEFENVFEGLAHEANLVWEHIKKYGKEPKFQGMAGIGNKGYTYGGNK
Ga0209992_1000028744F006773N/AMSQATQTKTNLPWKNGSKEVDYYVEIGTTPYGKYGLYKEMIPVGTGSRGRHMELAREIRLSNPEIFEDLELRQVVSRSR
Ga0209992_1000028745F015360N/AMDYLWAPKDEKLVSSLLDSLGFARVGVSQRYPTGVKYDCLVAICDVIGSNDKTASMVASRTHELQSKRKATGKAPSVDSVVSALASGKMSEADLKKAMKKAGLLK
Ga0209992_1000028746F019253N/AMTQHTDKVPLLSVQSTDDKRFTVLRELLNSVFDDVEDNAWSVSVNLGKFVDALSTMEQKDIDTISRTVKKYQVKGTSSGISGERTYGYDRSRVDRKMIRRRRAN
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Institute for Fundamental Biomedical Research
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