Scaffold Ga0209992

Basic Information
Taxon OID	3300024344 Open in IMG/M
Scaffold ID	Ga0209992_10000285 Open in IMG/M
Source Dataset Name	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209992_10000285 Open in IMG/M

Source Dataset Name

Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	69521
Total Scaffold Genes	90 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (20.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

69521

Total Scaffold Genes

90 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (20.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location Name	Kolumbo volcano, Aegean Sea
Coordinates	Lat. (^o)	36.5264	Long. (^o)	25.4868	Alt. (m)	Depth (m)	470
Location on Map

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Source Dataset Sampling Location

Location Name

Kolumbo volcano, Aegean Sea

Coordinates

Lat. (^o)

36.5264

Long. (^o)

25.4868

Alt. (m)

Depth (m)

470

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024093	Metagenome / Metatranscriptome	207	Y
F024886	Metagenome / Metatranscriptome	204	Y
F031892	Metagenome / Metatranscriptome	181	Y
F035957	Metagenome / Metatranscriptome	171	Y
F066695	Metagenome / Metatranscriptome	126	Y
F084085	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209992_1000028539	F035957	N/A	MSKPQYFSDLTLKQMFKYHDHTYMMSDDFRAYENGRAQQDIINDKVEAEGGWTKELCKLWNKYAPNDEAFQKDYEWIKKYSK
Ga0209992_1000028543	F024093	GAGG	MFKINDMATIKQMDIVAKEISKDIIEEIYKQCDWQIGQFLPESSEGTEINEAHSYLMRLVGRHIANKLDVTTNKYYDE
Ga0209992_1000028546	F066695	AGG	MELLTDDIINEALQTDGIMEEPDANWLMEYINSEYGGTLDHNTSWCDKKHMLKIYSESTYDGYDIWWCTHDERPYVSQDGFYYEDYTEWSSRAIDELTSGSDVWVEPHVWDDMEYEFNHELEQWWQDVYEDLFNDKKDELLDSGDYYEDEENKQ
Ga0209992_1000028548	F031892	N/A	MTSLEFNVLVDELDSHAQQTMNKKGPEYTTGNEDVLNNFKSTAKKLGVDPLVIWYAYFDKQVSSVAAHVSNEDLNKAEPMISRFGDIINYAKLGFALFRERDDV
Ga0209992_1000028549	F084085	GGAG	MLSLALHYSEKEMMCKDVMVTLLSLIEKEMKKRIEHSYFEEESDKWSNFHGQLRNIRLTIKNGGIK
Ga0209992_1000028554	F024886	N/A	MSRKFKNEVLWRVTVNVNGKQEYSINETNYDQLCDKLTDIMIRETL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209992_10000285

Overview

Ecosystem & Geography

Associated Families

Sequences