NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209992_10000028

Scaffold Ga0209992_10000028


Overview

Basic Information
Taxon OID3300024344 Open in IMG/M
Scaffold IDGa0209992_10000028 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)237560
Total Scaffold Genes294 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)189 (64.29%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameKolumbo volcano, Aegean Sea
CoordinatesLat. (o)36.5264Long. (o)25.4868Alt. (m)Depth (m)470
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000659Metagenome / Metatranscriptome952Y
F000942Metagenome / Metatranscriptome826Y
F002030Metagenome601Y
F007052Metagenome / Metatranscriptome359Y
F023709Metagenome209Y
F042009Metagenome / Metatranscriptome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0209992_1000002813F007052GAGMTKSKFVAKLMKKGEFLSSGTFESLEEARLWAMKEAKLLISDLEMLRSTNIGDIVVEIDKHFTEYEISTDELFKNSVRAI
Ga0209992_100000282F023709AGGAGMTLSELKKYDAVLRMSRYSTKRKGNERKRISKMACRGKIRI
Ga0209992_10000028238F000942AGGAGMSNPYELRFRLLEMASGYLYDQQQKQTQFAIDAWEFAKEEGTANMELFKDLQPKNYTIEDIKNKATELYEFVEKK
Ga0209992_10000028282F002030AGGMIGILVFALVVLATVCLWLLIEERKSPKFLIWFIPVLLLLVTSTYVTYTSILGIPKVGVPEKGMYLKHYIAEPNWIYLWILNKNNVPMSYQIVYTRKKHEALEGVRGKVEEGAFMVLGEDKEVIGESGEKEKSGGGYTIGGDISFYEWDYAENMPSKNSQ
Ga0209992_10000028291F000659GAGVVVPKRKGADMKTFSQYLEETNSKYIVSKNPHDKQWYVMGHVGRNKWMPVSNGFKNKTQAQKWAKSQDKVDSAASGEISGV
Ga0209992_100000283F042009GGAMICTNCGIVINKGIDISHLWNNPEDSVYACSERCAEEAPKNWLSDNPTTLYKNKFKQKGNYKSPNFEKG
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