Scaffold Ga0244777_10149945

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10149945
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1506
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027178	Metagenome	195	Y
F038093	Metagenome / Metatranscriptome	166	N
F054024	Metagenome	140	N
F105188	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_101499451	F038093	N/A	MDKIKINFFILRYGAILHTIFVFPILYMADIYANTPMFWAFLLNHVMFGYFILVQGCALGIKQTINIIAHQDAAKAREEDTNKNN
Ga0244777_101499452	F105188	N/A	MRLFSLVFISAALGLAISIFLYKVYNINIPPLFTGLAINAIGYYILRNKLD
Ga0244777_101499453	F054024	N/A	MSDTFSNHFYIEGPYEDLLNVTKDLDFTDGSIDYDGWEIEGGSAVLHFDGYYCPLDELEKASAKYPSLKITFRFTQELLIAGLLIYEDGKIKLQSYYNWDTGTSSVTTAQE
Ga0244777_101499454	F027178	N/A	FVHTLIMKESNMQKYVVMIKDGGKWEEYARLKDKILAETVLKLVSKDFPAKIIELK