Scaffold Ga0244777_10072162

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10072162
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2218
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001460	Metagenome / Metatranscriptome	690	Y
F002387	Metagenome / Metatranscriptome	565	Y
F007644	Metagenome / Metatranscriptome	347	Y
F009685	Metagenome / Metatranscriptome	314	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_100721622	F009685	AGGAGG	MKMTDQYVDEVLAEAQRLLWGGSETENIAAHNMIAKLIKDRMEDQKNS
Ga0244777_100721625	F007644	GAGG	LTKSSYFLEYMKLHLISLEQDLEMNPESINVIDIPGQIEATKHLLSVATDIMNNSNERYE
Ga0244777_100721626	F001460	AGG	MLGYDEVDLNRMIDAIHDAKLFYIRTPSDLIDKQPLIKDLEDAVSFLQGLWAEGYFD
Ga0244777_100721627	F002387	GAGG	MSDPHGIIGNYRKGGGIMASFLEDVNQMVIDSCYQEIAEQLLDDWINSNLEEGQYYADRQFALMSSDSYIQSEFNKFYELNPTDEGYIEC