Scaffold Ga0244777_10071101

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10071101
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2235
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002038	Metagenome / Metatranscriptome	600	Y
F074555	Metagenome	119	Y
F098917	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_100711011	F074555	N/A	NPLDPMAFLHNAIAHAHAQNELMAANARIKQLEERLEGMREAGDQLWYCVRHAQRIHADELIDAIEEWQEARNHG
Ga0244777_100711012	F002038	AGGAGG	MADIPKGIEKIATTVPKQYALLLFLDGFPYVEMTARKHADFLTDLNAWKRKTYPSLSRSNVRFFTLAPTGELKELTFTK
Ga0244777_100711013	F098917	N/A	MTNREYLRNILNQLAGEVATLRPTHEDALRIANEDLMQLQISINEAAAELERLDADNIEEAYHVKPVYDRIKAVIAHERVLRNQLDRIALAADSAIDLCNLLSAHVEEHGPNDDDAAL