Scaffold Ga0244777_10065855

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10065855
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2324
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000852	Metagenome / Metatranscriptome	860	Y
F000868	Metagenome / Metatranscriptome	853	Y
F009685	Metagenome / Metatranscriptome	314	Y
F033433	Metagenome / Metatranscriptome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_100658552	F000852	AGGA	MTTKREYLKQQGITVGVRGRFSGAAKVALQEAVSKGVTFTDEKANKAK
Ga0244777_100658553	F009685	AGGA	MKMSDQYVDAVLTEAQRLLWGGSETENIEAHNLISKLIRDRMEQKNLN
Ga0244777_100658555	F033433	AGGA	MYNKPSLEIIEVNYSCSPGGVDEFEVYSTDERDLLDYPLYSSESLAKAVEYCYQLGKDFTVRTVAEWEERELAYEARG
Ga0244777_100658556	F000263	AGG	MTPEDIGLPPHLQRLVNYDISGLDIMHGELKNLMLIWEKELERAQEIEEESGEAMDSMERKYCEGFLDSLVALYNLTYQLSFQIGVREENKKDGH
Ga0244777_100658559	F000868	GAGG	MSDPHGTIGIYRKGGSMSFLENENQMVIDAIYSEIGEQLVEDWVNSNLDEGQMYADYRFAEMSSDNYIKGRFNQFYDLNPDDQYYLEWDEEK