NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244777_10044490

Scaffold Ga0244777_10044490


Overview

Basic Information
Taxon OID3300024343 Open in IMG/M
Scaffold IDGa0244777_10044490 Open in IMG/M
Source Dataset NameCombined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2835
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007525Metagenome / Metatranscriptome349Y
F016662Metagenome / Metatranscriptome245Y
F030094Metagenome / Metatranscriptome186Y
F043404Metagenome156Y
F082675Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0244777_1004449010F016662AGGAGMTYLVATTEVIYDEQDLIKMMLATGEYGIHGHPISHEAMIEFVKDQEWQIEHHLFLDKFDVPAQISIKDEDGTDLFFAKNKLEIK
Ga0244777_1004449011F043404AGGAMIDTDNPLLQTLADDFVDLHGCGGIELEQWETAYNFVKHFYHTEEMVQIIIRSKK
Ga0244777_100444904F007525GGAGMNKLLEGVTVEYTQTIPTSKQMPEFYVWQEGYESYATITYLDRVVEVERGGEMSLSLPNLVNGELSDEGVTIVRYSDDLEAAGINDDIQLMQFIKTISNSGFEVYRMNPWWEVFAHNEDMGEVYDTFYEAIDGGIDHILDDRNW
Ga0244777_100444906F082675AGGAGMSKQYHWVVVYNEHWGAFMVDAESEFDRDKIMYDKETGRWEWLDPESEEEAEYYRLEEILAYNLTRLDLTAEKV
Ga0244777_100444908F030094GGAGMKLRGIFEGTFESVWSMEVPQAEWDKYLEEHPGIDETDSDDIQQMWDYFKSIGCYDEIDDTVDTDVVMTGIETYGVEVEV
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