Scaffold Ga0244777_10031884

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10031884
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3347
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003750	Metagenome / Metatranscriptome	470	Y
F015209	Metagenome	256	N
F056602	Metagenome	137	N
F065778	Metagenome	127	N
F074878	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_100318841	F003750	GAGG	MTLDMVNRLLYLVVWGGGIVAFWQITKHMPKALYTLLECISVMACSVLLLTPIAMIIEYILGGNIHTTMMFVGCLAGVGLLCGIWMVMVQSSRELQGKKQY
Ga0244777_100318843	F015209	N/A	MNSYRRKALSLWSALLAEERWHKFESTNCKPSCKGWNGWAPYCECFENHCTFVPKGEIEDMELVIVAKPIDDVLRNIQVIP
Ga0244777_100318844	F056602	GGAGG	MSNWTKGFIVVAITSQVFLFVILFGCKVGEGFYISGVDLVGMVLSSFCTLVYIPAILVSHDSDKIRKKLNEQLQA
Ga0244777_100318846	F074878	N/A	MAYTIAMNTTDKVIVKFRFRNPRMVYSVYFNGMLLTSGYDAQQLGEDYAKKYGVEWLLQDGDKFYSQKGLVK
Ga0244777_100318848	F065778	N/A	MNENTTVIVDHGCALFGNYQASFFCKGEITVESILAEVSKRMGVPCTSTGYNEEFHSITIIVL