Scaffold Ga0244777_10027313

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10027313
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3618
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035726	Metagenome / Metatranscriptome	171	Y
F046311	Metagenome	151	Y
F077338	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_1002731312	F035726	AGGAG	MSLINKKETKVKYYSDLTKGEMVKIISEQKGLNLSALDRATKIDIEEIAKALNV
Ga0244777_100273134	F077338	AGGA	VGVEKALDSKKVLQAVNLSPSESWIEKLVHVHPMRQITYASIIQVSVFFCMLGGFQVNQWIFST
Ga0244777_100273139	F046311	AGCAG	MGSVAVMRTPRQQRNHENLQRQKQRVINYLNENEMIVFFLLGLSILVMVGCLAVALA