Scaffold Ga0244777

Basic Information
Taxon OID	3300024343 Open in IMG/M
Scaffold ID	Ga0244777_10026430 Open in IMG/M
Source Dataset Name	Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3680
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (72.73%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium	(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)	Depth (m)
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F011394	Metagenome / Metatranscriptome	291	Y
F066776	Metagenome / Metatranscriptome	126	Y
F072349	Metagenome / Metatranscriptome	121	Y
F105192	Metagenome / Metatranscriptome	100	Y

Family

Category

Number of Sequences

3D Structure?

Metagenome / Metatranscriptome

291

Metagenome / Metatranscriptome

126

Metagenome / Metatranscriptome

121

Metagenome / Metatranscriptome

100

Protein ID	Family	RBS	Sequence
Ga0244777_100264302	F066776	AGG	LYLTEKGVEIFIKRSQSKTQESFWNNYDLVIWKKDNGGYTSINGMYRQNAWGKVEKFSIGQEGIWKLSKKYVKHFK
Ga0244777_100264304	F011394	AGGA	MFIDKNKDHFKYGVNEWTGEPNKPVFYNKEMALKVRELKSPAPDLEMDIVKYPDFLAIRLYENNFAQYDGSMRVRVIEYIEMVKNILQSYGVRVELEGKPGGKTK
Ga0244777_100264306	F072349	AGG	MEKVLCYSCNKSKNELSAKKSSLLAVNLLLCQSCTDNKLEPRWIVILAGRQYGSEHVKEHIAKKKYIGLDITASELLI
Ga0244777_100264307	F105192	N/A	MNISITQILITLFAASISGVFTAWINSRRVKKDKVAQIADKAHDQLLIEIKDLQIKLYKLEKDLNEWKDKYFEALQELIQVKAELEGTMLKLTHIEMHEDLHENL

Protein ID

Family

RBS

Sequence

Ga0244777_100264302

AGG

LYLTEKGVEIFIKRSQSKTQESFWNNYDLVIWKKDNGGYTSINGMYRQNAWGKVEKFSIGQEGIWKLSKKYVKHFK

Ga0244777_100264304

AGGA

MFIDKNKDHFKYGVNEWTGEPNKPVFYNKEMALKVRELKSPAPDLEMDIVKYPDFLAIRLYENNFAQYDGSMRVRVIEYIEMVKNILQSYGVRVELEGKPGGKTK

Ga0244777_100264306

AGG

MEKVLCYSCNKSKNELSAKKSSLLAVNLLLCQSCTDNKLEPRWIVILAGRQYGSEHVKEHIAKKKYIGLDITASELLI

Ga0244777_100264307

N/A

MNISITQILITLFAASISGVFTAWINSRRVKKDKVAQIADKAHDQLLIEIKDLQIKLYKLEKDLNEWKDKYFEALQELIQVKAELEGTMLKLTHIEMHEDLHENL

NMPFamsDB