Scaffold Ga0244777_10026057

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10026057
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3707
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008493	Metagenome / Metatranscriptome	332	Y
F031871	Metagenome / Metatranscriptome	181	Y
F045555	Metagenome / Metatranscriptome	152	Y
F058707	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_100260571	F008493	N/A	MTKRTARKDSNYIIYEARCVETGVSYIGLTRKGSVTVTRAVAERWRKHVSRAKNENRLWALYVYLKSGGLDMTWTHTVIDVIRGRAEAYATERIIVKAVEPELNDQYL
Ga0244777_100260574	F031871	AGGAG	MKQDHTLYIYKADKRTKSGERLVSTTVWQHRDAAEMAREVRELQYSTWPVSQGYRCEFVATMKTVRNLMTGVDIQIPHDTPRSCDPSSELYWSM
Ga0244777_100260576	F045555	AGGA	MTSIFIVRAEDRGAPESIIYGVYPTAELAKARMAVLEGEDFGHGIVFYDEVKVGPMGADCEFYNR
Ga0244777_100260579	F058707	AGGAG	MQVHFIDSGVAQDLGFHEVDCQSFKMDSDDAPYAIVSNPFFKGDSLRAEYNFYNNCLQWVVDVS