Scaffold Ga0244777_10021677

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10021677
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4066
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015082	Metagenome / Metatranscriptome	257	Y
F021761	Metagenome / Metatranscriptome	217	Y
F028799	Metagenome	190	Y
F052965	Metagenome / Metatranscriptome	142	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_1002167711	F028799	GAG	MTRTSITANMTAAELAAWKANNRKQSSFPVVITASRKPARKSQRQEWQEFRNETLGMIEAAKRERHFQILPQLMQRLTTADTMLANRAFN
Ga0244777_100216772	F052965	GAGG	MDAISIEAAFREWWEESYKRPPAPQAVMTHVAFAKHVLQLIELLEAVGEY
Ga0244777_100216778	F015082	N/A	MSDSDIFWTMATAAQYGGSFYQAMGNAGLAADPNNKRRILAAFPEMVATYGAASRLHQTMRAGVAA
Ga0244777_100216779	F021761	AGG	MISNPWVNRITALVVLAAIYAAGYAGGRDQATLAHHNHPACHTNLKP