Scaffold Ga0244777_10021091

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10021091
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4118
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F069708	Metagenome	123	N
F090065	Metagenome	108	N
F095452	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_1002109110	F090065	GAG	MSKVLVTLDYEELEYCAISGARRNIRAMQKDRKPRDNTKYSAQNWWQSNITGVIGEYAVAKSLGEHWQDLEADRGGFDVLSYQVRSTENTSPKLAARPGDDLNHIYILAQVYKCRVLIHGWATGYDIKQLGAQEHGTIRLHHDMLNDMSLLLHPTIYTSQVQEWERPDYQ
Ga0244777_1002109111	F095452	AGG	MSRLTEADRLELRALFSRLADVQADLIIEELEHQPHQGNALKQDMWGLEARLADIHADAT
Ga0244777_100210913	F069708	N/A	MKYTGTTDGAALGKRPGTEKFVDIIKKKGFTNLGTWAVRNMRGSDRLSVHATGRAADIGYKDKATAAMWANWLVANYETLGIEEVHDYAGTTKKGTEKWGRGWRCNRDGKPGWKDWTETANGGSGGGMWLHVELTPAMADDPQAFVAAWKSVPPPTPAVKTVTA