Scaffold Ga0244777_10016123

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10016123
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4705
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (6.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013759	Metagenome / Metatranscriptome	268	Y
F019136	Metagenome / Metatranscriptome	231	Y
F031867	Metagenome	181	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_1001612311	F013759	N/A	MKIELGLSVLSKRETLLGVQLTTHNGVSVKDGELCSERVVEFSIGIIFAIFTIGFVSIGNKIETPDNVMKAIEAFESEMDKNK
Ga0244777_100161235	F031867	N/A	MKIIYMQRTIEMIVKNEIELSADSLLNTKPTRVETHKEQNYLVYEFDNTELF
Ga0244777_100161236	F019136	N/A	MSLTIQNYSKLESWSHNYKEFMIGEVIETETEYRFRVGYNGLPYTIKIFRQITISNECEIVLRDGADTTQYGREWINVRKLKSKELTAMIFETLIVKHKPKARGINNTFYNNGPF