Scaffold Ga0244777_10014143

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10014143
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5024
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022391	Metagenome	214	N
F053660	Metagenome	141	N
F054042	Metagenome	140	N
F088530	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_100141432	F053660	AGGAG	MAKRGYERKETPMGAGRDHPNTRLIRWVGDRTDLGLVKNETYTWSELGAAVGIVASSMRGRVRGAPEVSDCHMWANGTRKPKEEWGITTIVRCESKADKISQKHLRMKL
Ga0244777_100141433	F088530	GAGG	MSLNYNKDLSKKEIQAAWDYALLSGAKHGVKMYRVFYDFMNAIGSNAAELYGLNYKKYYEPEFQDFFDGLELNRCRDRQSNGRLSCGFKMNDALSFVGARCLPLQLALLDKRVDLDEIVANVRHYKWVRKNHTGKKTKKRTNDSYRYVNLKSLTFKNQWSTVK
Ga0244777_100141434	F022391	GGAG	MTQGDYVKVSSTTEVEAKLKHLETRIRGWNYQSPLAIKLMPFTDPTSLSQDALFNIWCREIADQMKAKTPSADAEAWKLWLKHKFLGTYAVKVGRESIEGQVYATPKGKAKMAQFMHSVLVFADEKLRVRLSVPRNSEYVKVRENEQAKESKQKAKEEANHTAGSGKGSSATAKTRSSKGEQQIGLL
Ga0244777_100141436	F054042	GAGG	MIEQTPFIQIVFEEIEEYGLYDHKIKLFNLMEAALNGMCGKARKEIDELWLEIQDYKEQLAIPPTESELLARNPDMAV