Scaffold Ga0244777_10010518

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10010518
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5885
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024536	Metagenome / Metatranscriptome	205	N
F029344	Metagenome / Metatranscriptome	188	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_100105182	F029344	N/A	MKKLILLSVFSLMTWMSLDAQVYAVAASKAEYATQKSTGIITFRFGADVLPETILTAGENFTEYFTTSFDAATYVGTFTMKENVELNRLMLGRLLIGCGVEVIEFDGVQLPVYQFSNEQL
Ga0244777_100105185	F024536	AGG	MRFFIVFISMALLHQTSAQAYMRKKQNIGFYTGGTFRDAQFNTASIGLTRSVFNYFEPEIGLRATLPLAAPSDNSQMHTVYLTAGLNVRKSLFPINQRKKGRSCRGEIIEIFAAPEYNYLIKSNTDRYDKGQFSVRTGLGIFHYQTGYAKRSKAWNVKAQVYFRYVPGPITNTMSIKNEVGVQLRIFKFKTYDFVK