Scaffold Ga0244777_10010354

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10010354
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5931
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010684	Metagenome / Metatranscriptome	300	Y
F020167	Metagenome	225	Y
F034575	Metagenome / Metatranscriptome	174	N
F035304	Metagenome / Metatranscriptome	172	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_1001035410	F034575	GGAGG	MENNTTLDPYLMKLVELGMDGADILHGHLKVLMVEAEAILDRCIEAEEYSEDAMDSMARTEATGYFDALSEVYALTYAIAFAKEEVKNRKEILNG
Ga0244777_1001035412	F010684	N/A	MNEYQVEVIFEPTGDYMNFRYEAESDNEEDLCREILNQLSIVSFKVEE
Ga0244777_100103545	F020167	N/A	MTQTIRTIDELVNEMYMDNESHLEYMENMNGGDCDCAIHTTLNTIVKYWWDEEN
Ga0244777_100103549	F035304	N/A	MNPNTLIEYIKINIISLEQDLENEDGADSIVPYLEGAIDVSRHYLEAVNGE