Scaffold Ga0244777_10009155

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10009155
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6320
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (87.50%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001562	Metagenome / Metatranscriptome	670	Y
F003690	Metagenome / Metatranscriptome	473	Y
F004431	Metagenome / Metatranscriptome	438	Y
F015208	Metagenome / Metatranscriptome	256	Y
F093873	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_1000915516	F001562	GGGGG	MTKSQFEKDLDIKDSFIDLLNDVYPSVKIGYSTFTPAEILECCDPVAFSIGLIEHEDYLAEMENE
Ga0244777_1000915518	F003690	N/A	MTISGILLELNDYGLELDSFLGAIYLPWHTIILTALAVVAYKVYKRKRAK
Ga0244777_1000915520	F004431	AGGA	MTITYSLWDGAQLLGVNFTATSADEMNKVVADLQKVSKGVVAHMRKVEQN
Ga0244777_1000915522	F093873	AGGA	MFSLNYTVGLGSTTLLVPSEEYANEFLDIVSQTRVIDTVTLTELPNYKPSNRKVYATTRSWE
Ga0244777_100091559	F015208	GGA	MYKITVANDSEPRHFTKEYSDELEAHTEFAKFIDWGFADEYSTVNLYTPTGKCYTKVFYRSGMVVVK