Scaffold Ga0244777

Basic Information
Taxon OID	3300024343 Open in IMG/M
Scaffold ID	Ga0244777_10006747 Open in IMG/M
Source Dataset Name	Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024343 Open in IMG/M

Scaffold ID

Ga0244777_10006747 Open in IMG/M

Source Dataset Name

Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7388
Total Scaffold Genes	14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (42.86%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

7388

Total Scaffold Genes

14 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

6 (42.86%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Columbia River Estuary, USA

Coordinates

Lat. (^o)

46.234

Long. (^o)

-123.9135

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F076075	Metagenome	118	N
F076092	Metagenome	118	N
F082689	Metagenome / Metatranscriptome	113	Y
F105177	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_1000674710	F105177	N/A	VIKTNSKANTMVKLAQEEKMKTKYSEEELNNAMSEQGIQTAFETYKTNGGKASQDSFLSQWKPLIGRMLEGFTNNMGVAIAEEKYKRNNPFWDPRD
Ga0244777_100067473	F076075	AGG	MWYRKAMDLNDLNKDFALERENVIDAVEEENTKQNVEDLFSKVRAGEQYTSSSGAIKVMPPREEPPFTDEEVDGKFDSESTDAYDVYEGIKDFPSTVTTLKNTANTISRYIDSGVLQEFNRKIDSLSPMLEKIVQSAFEKVQLIESSFNNPELSRQFDKEGYPRVTEAEASQSNMLTLQITKAINELYNSIRNEDARQEWLNTMARKGVAANFLRPADKARYKETMNDVWGL
Ga0244777_100067475	F076092	N/A	MNAILIFLLLVDPKVEFRDRCIKCHEPAAVLFGGKLKTKDLRKTIYDMYRVDSSEKPSKAQVDSMFKYAKSLKKN
Ga0244777_100067477	F082689	GAG	MNKRQILASLHNIANSLDNSGFNKEASSLTYLMKKLAQEDETQANETPEYDYTKERLYHTLSDFGKKYVADRNNEKPITSYREFDAAIYHAFQSPNSKISQMMFLSPFEQSQNTFTQLNPDVSELLRSMFMIDRGIDSDKSFESFKGSIFPALKKKMQERPSTETLDLTTGIVPFGRKTTNKSNEYHKLYRRAKSLLKKAAGEYWNKSGAQSSMDNLLRYIINDSYNSEYRDEAYSIMEEAQRLHDQLKSDETSMPKYTIDVPKF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0244777_10006747

Overview

Ecosystem & Geography

Associated Families

Sequences