Scaffold Ga0244777

Basic Information
Taxon OID	3300024343 Open in IMG/M
Scaffold ID	Ga0244777_10006638 Open in IMG/M
Source Dataset Name	Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024343 Open in IMG/M

Scaffold ID

Ga0244777_10006638 Open in IMG/M

Source Dataset Name

Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7459
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (16.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

7459

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (16.67%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Columbia River Estuary, USA

Coordinates

Lat. (^o)

46.234

Long. (^o)

-123.9135

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009267	Metagenome / Metatranscriptome	320	N
F018136	Metagenome / Metatranscriptome	236	N
F023103	Metagenome	211	N
F035667	Metagenome	171	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_100066382	F018136	N/A	MITDATYTLTLEKALTDTFVLALQQEMQSALVVTAAENFGTMTLPACFVKCTRQRESIIDSAIFQFSVDIALIVQADDRDQMAMENLWSQVLCISHDITGLKTKLNAVRPQYAFVFGILRDGPVSLSTNERHFERSVTITVHAALFAS
Ga0244777_100066385	F009267	N/A	MKKNKDNELEKDDEILRVQAMEDGPKKVNGRILRPITALTISWMQRNEVFSGDMDPVWKAAAFTFLHSEPMSTIRGVVNDRDTFINAVDSWIEKNMKHHHETTAMSDEMGKAFDLYNSASPASQPGEGAGSPN
Ga0244777_100066386	F035667	GAG	MEELPFAAGLQLLHADDYANGRHSAWANNNARVDIDALATIEQTLAKHGKIQIRECEI
Ga0244777_100066387	F023103	N/A	MAKFKFESVKFEQIMKDYATIREVTIPDAVMLNARLLCVELARRTQPFGENSTAGTIRVKNDIGKIIKNTDQLDEYADRVGSQRIKARLNALIKKGRFDIVETILRNIGFLNKWTGMEFISASKIKPIHKDARNKTTGRTKSRGSSLFVASNSDQETYIAEVQKRVGMSKGGWANCATQLKRVNKGSLLSNFPKWVIKAMKAGSGSVKDMTSDLKNPRVEMTNNIPWASNVIPETEKEFAKAVIVAKMKKQMEAILKKRQKGLIET

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0244777_10006638

Overview

Ecosystem & Geography

Associated Families

Sequences