Scaffold Ga0244777_10005689

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10005689
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8082
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (73.68%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031657	Metagenome / Metatranscriptome	182	Y
F037425	Metagenome / Metatranscriptome	168	Y
F039346	Metagenome / Metatranscriptome	164	Y
F044731	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_1000568916	F031657	N/A	MKKQKKMHFLYHIENVGFKMLTESQARKYKDKHGDVIWNVHKTLDLSPDFLEVK
Ga0244777_100056896	F039346	AGGA	MIATFVITLIECLEIAFITLLLVQTNIRKRDSEKHLRQHLQVLPQVQIIMYGILGLIGGLLTAYYLHDMLENYEWLMYAILSGLFFYLFYRNKDIQKHIKEHVDNIRQSSSTVLFLAAFFIYGRESFEIFSNLFLNPNASWSAAICAAIVAFMIYMFARDSKYTSYVFKFGYWAYLAFGIWFGYEALEHLHIL
Ga0244777_100056898	F044731	GAG	MTLEEVYRKYEKLTLEICTGETSHDNTLECAGAMMGQAMKLYKLCLSPEDFDALMQIISQASGLDGDGWDDDDFPSGTLH
Ga0244777_100056899	F037425	GGA	MKTSTVKPLYKWNGFRKQYMGIIQNLINNVDICNRRFAEEGEEGYLIQREVYIKEIEELKTFIKQKEIELGYYGDEHEDKTS