Scaffold Ga0244777_10004393

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10004393
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9247
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (82.35%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001332	Metagenome	720	Y
F021772	Metagenome	217	Y
F024977	Metagenome	203	Y
F066573	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_1000439315	F066573	N/A	MTIQVKGVASTLRDLGKINPSLKRELNKDIRSILKPMVNEINQSIPSSPPLSGMAHNGRTGWGNRKNAVIKIDTRKPRRGLNGPSTKTAVNIVRIVTKGAPVAIVDMAGKAGGTTSRREPKYQRPTFARSLPGDPSRFMWKNAEKTIGSVEREMNDTIKAVVFRANQELMKVKI
Ga0244777_100043932	F024977	AGGA	MTEFMQPINPIRITTGSDEWSFKTPVFAIAVQDEKVTYLTINGNFYRPDQIKFAEMNINGQWVALESHKHRIKEAE
Ga0244777_100043935	F021772	GGCGG	MNCNICACGFNSADMRMRTELRGICLKCAEEFGFKGMTVEETARCVAMIRVINNLKTQTPAQARHLKDMES
Ga0244777_100043936	F001332	GGAG	MMTQIQEMTALITKAEIAMKAATWEIERLRDDVAMLRKALTELAYVAEEHGIYLSNLTRSTQDAIVAMRLGGFK