Scaffold Ga0244777_10003940

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10003940
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9812
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031872	Metagenome / Metatranscriptome	181	N
F033435	Metagenome / Metatranscriptome	177	N
F042901	Metagenome / Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_100039401	F031872	N/A	VDEWIYDTLTADATLQGLLAVDNRSPSYQQGIYLYLAPEKDPISLRQPQVPYIVVRHTDAGQTDTTSMCGGRIVTTSSHQVWCWDTQSGAVSMARIKAIVDRIDTLLNRQTVNSTTPVFFLNRASVSSSVDVSQDGRVDNGIAQIYVATITPEV
Ga0244777_1000394010	F042901	GGAGG	MARKPTADKEITRVEEKPEGLLWLLKASEHEILERLNAEDAIIFVHPALDGIVSFRIEENPQHEQKVVHVWR
Ga0244777_100039403	F033435	N/A	LACPESLVCQDHNLSSIFDNIPKSEGRPNHVVDIERFIGAPGSFTFREPKASDLFPRPEVQKALKIGFPEFPDQMLQILMIMARCYVIQPGDGEINPGRRFAQLARDRSEIYLYVVGEFAKAFPIDIEAAVDEVPND