Scaffold Ga0244777_10002688

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10002688
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12106
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (93.02%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 14 (100.00%)
• Associated Families: 14

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000311	Metagenome / Metatranscriptome	1326	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000447	Metagenome / Metatranscriptome	1128	Y
F000852	Metagenome / Metatranscriptome	860	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001460	Metagenome / Metatranscriptome	690	Y
F001562	Metagenome / Metatranscriptome	670	Y
F004051	Metagenome / Metatranscriptome	455	Y
F004840	Metagenome / Metatranscriptome	421	Y
F009530	Metagenome / Metatranscriptome	316	Y
F023344	Metagenome / Metatranscriptome	210	Y
F036238	Metagenome	170	Y
F047059	Metagenome / Metatranscriptome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_1000268811	F023344	AGGCGG	MEAFTDTVGEHILGAIQVDIEQALFEDWNQSNLDEGEAYAEYRFMQFAPDTLKQSYNEYYGYIEGDEFLL
Ga0244777_1000268813	F036238	GGCGG	MGDRANFGFKQSNGETIVLYGHWAGHGMLERLADAVEAARSRWGDESYATRIAVSHLVGEQWQDTTGWGLSVNNILDNEHKIPLIDWNTQTFSLHEEAPWSESTEYKVRGMQDEPMFTMTLDSFINKYSRVNA
Ga0244777_1000268815	F001043	AGGAG	MSDYKDGFQDGYKFAREEIIEKLAEIDITDIDTWILDRLSDMIEGGTI
Ga0244777_1000268816	F000311	GAG	MYFELTAPDRLSMERAYWDAEITGLDPEAMSALTFNIGTGSIEKVSRLRDKYNLIESYVSDSKVTGY
Ga0244777_1000268823	F004051	GAGG	MTIQDKLYQVGDLFTTLKSKKTGVIKEIHPQASGSVRVLLEMPTKETRWTTVSASTLAGA
Ga0244777_1000268829	F004840	GGA	MYKITCAYDGNAPHWSAEYENEYGAWENFFLFTDWGFADEYSTVNLYTPAGKCHTKVFYRAGRKVVIK
Ga0244777_1000268830	F000447	GAGG	MGYIEIFRMDQDGAGWVDLSEATPDELFTIEVGLLNEGALFYTPEAE
Ga0244777_1000268834	F001562	AGGAGG	MKSQLEKDIETKESFIDLLNDVYPSVKIGYSTFTPAEILECCDPIAFAIGLAEHEDYLAEMENE
Ga0244777_100026884	F000852	AGGAG	MATKREYLKAQGITVGVRGRFSGAAKVALAEAVAKGVTFTAETPAKKAK
Ga0244777_1000268840	F009530	GGAG	MTIKYSIWQGSKLISIDNIAHDVNAIDHLIQSLNNSELGKGKKFTANVMDIKVTA
Ga0244777_100026885	F000441	AGGAGG	MKMSDDYINDQLNKAQKLLWGGSETENIEAHNIISRLIKDKIEQVS
Ga0244777_100026887	F000263	AGG	MNKEDIGLPPHLQRMVNARVSGLDIIHGELKNLMLIAEQDLADALEQEERSEEAMDSMVRTECEGRLDTLVALYELTYQLSFAIGEQIEV
Ga0244777_100026888	F047059	GGA	MKIHKISLEQDLEDARNNIPLNEDEYFESDAYYTGAIDTMEHILSVADDIMNNSNERYIN
Ga0244777_100026889	F001460	GGAGG	MLGYEKKDLDTMINSVHDAKLFYLRSPSDLMDKTELRTNLEMTVSFLQGLWAEGYFD