Scaffold Ga0244777_10002645

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10002645
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12187
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (22.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021755	Metagenome / Metatranscriptome	217	Y
F028487	Metagenome	191	Y
F044492	Metagenome	154	Y
F078708	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_100026454	F028487	N/A	MYNSDILDHLISKYGIDDVIKFCDMESEKNSLLAQSVDEDKQHHPEPNEWKFERDWWADSGKQLKSRI
Ga0244777_100026457	F078708	N/A	MIVQTVHEILNPFDVEVKQLGYAVALFMIVGSIHSNPQFIVRFYNTGQLRTVDQNDLSVYGNPTAGEDLIPDPDVVSKLPANARRNTDFLNKQKEK
Ga0244777_100026458	F044492	N/A	MSDEKQVTVTINRQPSFTEIWHEGSVDFNGRTFMFWLINPRGLDDQGREYEMEVRWWFKQVPMEVRKLSEQIINDFKDAKDDSSNSTRDSKSI
Ga0244777_100026459	F021755	AGCAG	MKRTILKLHDKKYADLIDHNVRECIQKKESYEIEYKGKVMTLTPEELKTKCVGRQYIAVPKFGDRPYHLLSYLWEPTKTTEK