Scaffold Ga0244777

Basic Information
Taxon OID	3300024343 Open in IMG/M
Scaffold ID	Ga0244777_10002043 Open in IMG/M
Source Dataset Name	Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024343 Open in IMG/M

Scaffold ID

Ga0244777_10002043 Open in IMG/M

Source Dataset Name

Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	14174
Total Scaffold Genes	37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	24 (64.86%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

14174

Total Scaffold Genes

37 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

24 (64.86%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location Name	Columbia River Estuary, USA
Coordinates	Lat. (^o)	46.234	Long. (^o)	-123.9135	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Columbia River Estuary, USA

Coordinates

Lat. (^o)

46.234

Long. (^o)

-123.9135

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F025748	Metagenome / Metatranscriptome	200	Y
F029757	Metagenome	187	N
F047683	Metagenome	149	N
F054874	Metagenome / Metatranscriptome	139	Y
F081348	Metagenome	114	Y
F103267	Metagenome / Metatranscriptome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_1000204316	F081348	GGAG	MFEKVPYGVKVRVRGNEQAGFIAEYVICPYRFLSFMDNWNLISRYTHTPFTKHGTFPTLELAKEAAMTKYDSLINHFRHDEEQKKIAEAQRKVVWKHP
Ga0244777_1000204320	F054874	GGAG	MPNEAKGGTFAPADMELLKRALHYYKDMLTRIEESERSLSPELTQVANLLHRIGRIA
Ga0244777_1000204321	F103267	GGAGG	MEVELFTFPTMENPKAVEDTFCDLLNAKRRGESLPVEALDWMDTANNWLLESK
Ga0244777_1000204322	F047683	AGGA	MTLTVEQIESTFAAPTEGLADSYYPVLAYWIPIAKLEEVRAAYRAANTTIRIRYRGPRTVSVGREMSRPDKTTYLRSRHRAMQDCLIADATHFTVYDYTAR
Ga0244777_1000204325	F029757	AGGA	MLTLSDINTLTNSKDGDIYSDLYKDVYGSRPRYAQFRDLEEFQDDYDFLCNKLDEQLEQQQVEQARNFVEFVARVEETMQIVEGATRERAIEIIADAEGISEDEFDFYGLEILEYRFELKFGSISRWLSE
Ga0244777_100020434	F025748	GGAG	MEIFALLGEWDYEGSVLLGVYASEDEARTAHGVYTRDGDRFIQRYYVERRTLGAPVDSDEYRIYIG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0244777_10002043

Overview

Ecosystem & Geography

Associated Families

Sequences