Scaffold Ga0244777_10001994

Overview

Basic Information

• Taxon OID: 3300024343
• Scaffold ID: Ga0244777_10001994
• Source Dataset Name: Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14331
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (61.76%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.234
  • Long. (^o): -123.9135

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010681	Metagenome / Metatranscriptome	300	Y
F048809	Metagenome / Metatranscriptome	147	Y
F073158	Metagenome / Metatranscriptome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244777_1000199428	F073158	N/A	MNIRLPGVDTAIKYLRPDAKWDLYNRTFTRWECPNGSQPPTWEEVEAQVQKDVEVYNYYLYARNREAEYGDWKDQLNLLYDDIKSGNLENGKWVQMIDSIKEKYPKPQ
Ga0244777_100019946	F048809	GGA	MIRKFMKWFISPNEKTIADDVYSKLIELQERIEALEAENVENSNCFYELSNCIDAVDARIDILTLENWNKKDV
Ga0244777_100019947	F010681	N/A	MKMRLTPNQQFWANIFRCAVERSNIYFQDKDLERHAREHTTVVLALQKGDQFWKELL