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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300024343 Open in IMG/M |
| Scaffold ID | Ga0244777_10001971 Open in IMG/M |
| Source Dataset Name | Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 14408 |
| Total Scaffold Genes | 22 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 16 (72.73%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Columbia River Estuary, USA | |||||||
| Coordinates | Lat. (o) | 46.234 | Long. (o) | -123.9135 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F036143 | Metagenome | 170 | N |
| F090065 | Metagenome | 108 | N |
| F095452 | Metagenome | 105 | N |
| F104708 | Metagenome | 100 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0244777_1000197112 | F095452 | AGG | MSNIAKPRMSEADRLELRALFSQLADLQANEILEELEHQPQQANGLKQDLWGLQARLDDIHADANT |
| Ga0244777_1000197113 | F090065 | AGG | MSKVLVTLDYEELEYCAISGARRNIRAMQKDRKPRDNTKYSAQNWWQSNITGVIGEYAVAKSLGEHWQDLEVDRGGFDVLNYQVRSTEHTSPKLAARPNDDLNHIYILAQVHKHRVLIHGWATGYEIQQLGAPEYGAIRLHHDMLNDMSLLPHPTIYTAQVQEWERPDYQ |
| Ga0244777_1000197118 | F104708 | GAG | MVNPTDHLDQALANLWANTRPKATDVLIRNLRAHAYSYAMDDAALCEDLRQAIGRLEHPSALEPQPRSIVERLDDIVQELHDLGHTQLGGETDQLLIAIDNALRGAK |
| Ga0244777_100019713 | F036143 | AGG | MPADASYKVYGIQEALAEINKVDRVLRRQITKDIQSGAGTKLVTAARSFIPTASPLSRMVNGNMIKGRDGTGWKRERVLAGIRTVVGKRGQRARTVRFSNGRTADFKATQYQLLVLQQKDVAGAIWDHAGIRGGGQFVANLEAEGETVGPRTAPRALEPAANSVLPAVEDEVGKIVAQVMTIVNRNLVTTRTR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |